This work presents a modeling and controller tuning method for non-rational systems. First, we propose a graphical tool where transfer functions are represented in a four-dimensional space. The magnitude is represented in decibels in the third dimension and a color code is applied to represent the phase in a fourth dimension. This tool, which is called Phase Magnitude (PM) diagram, allows the user to visually obtain the phase and the magnitude that have to be added to a system to meet some control design specifications. The application of the PM diagram to systems with non-rational transfer functions is discussed in this paper. Second, a fractional order PID controller is computed to control different non-rational systems. The tuning method, based on evolutionary computation concepts, relies on a cost function that defines the behavior in the frequency domain. The cost value is read in the PM diagram to estimate the optimum controller. In order to validate the contribution of this research, four different non-rational reference systems have been considered. The method proposed here contributes first to a simpler and graphical modeling of these complex systems, and second to provide an effective tool to face the unsolved control problem of these systems.